Programa

Programa Preliminar

Module 1: High Performance Computing

Aspectos básicos de la programación como Linux, Python y R.

  • Linux introduction
  • Python introduction
  • Introduction to High Performance Computing (HPC)
  • Practice HPC & SLURM
  • R and R studio introduction

Module 2: Genomics

El segundo módulo se centrará en las herramientas bioinformáticas para el análisis genómico y los ejercicios prácticos.

 

Introduction to Genomics & Next Generation Sequencing
  • Base calling
  • Assembly
  • Region Prediction
  • Mapping
Metagenomics & Microbial Survey
  • Metagenomics
    • Binning
    • Genomics
      • Taxonomic approach
    • Gene Centric Approach
      • Functional Metabolic Profiling
  • Microbial survey
    • 16S – Amplicon scheme
    • Tools & DBs: Qiime & ARB Silva
    • Analysis

Module 3: Evolutionary Genomics

  • Phylogenomics
    • Phylogenetic inference based on whole-genome sequences
    • Genealogical discordance in genome-wide datasets
      • Inference of historical hybridization among lineages
  • Genome-wide diversity and historical demography
    • Estimates of genome-wide heterozygosity
    • Inference of historical demography: PSMC as an example
  • Investigating adaptive evolution based on genome-wide datasets
    • Inference of positive selection on coding genes
    • Enrichment analysis of positively selected genes